Package: tidysq
Type: Package
Title: Tidy Processing and Analysis of Biological Sequences
Version: 1.2.2
Date: 2024-10-23
Authors@R: c(person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           comment = c(ORCID = "0000-0003-0925-1909"),
           role = c("cre", "aut")),
           person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("aut")),
           person("Laura", "Bakala", 
           email = "erdaradun.gaztea@gmail.com",
           role = c("aut")),
           person("Leon Eyrich", "Jessen", 
           email = "ljess@dtu.dk",
           role = c("ctb"),
           comment = c(ORCID = "0000-0003-2879-2559")),
           person("Stefan", "Roediger", 
           email = "stefan.roediger@b-tu.de", 
           comment = c(ORCID = "0000-0002-1441-6512"),
           role = c("ctb")),
           person("Jadwiga", "Slowik", 
           email = "jadwigaslowik5@gmail.com",
           comment = c(ORCID = "0000-0003-3466-8933"),
           role = c("ctb")),
           person("Weronika", "Puchala", 
           email = "puchala.weronika@gmail.com", 
           comment = c(ORCID = "0000-0003-2163-1429"),
           role = c("ctb")),
           person("Katarzyna", "Sidorczuk", 
           email = "sidorczuk.katarzyna17@gmail.com",
           role = c("ctb")),
           person("Filip", "Pietluch", 
           email = "fpietluch@gmail.com",
           role = c("ctb")),
           person("Jaroslaw", "Chilimoniuk", 
           email = "jaroslaw.chilimoniuk@gmail.com", 
           comment = c(ORCID = "0000-0001-5467-018X"),
           role = c("ctb")))
Description: A tidy approach to analysis of biological sequences. All
        processing and data-storage functions are heavily optimized to
        allow the fastest and most efficient data storage.
Depends: R (>= 3.0.0)
Imports: checkmate (>= 1.9.0), cli (>= 2.0.0), crayon (>= 1.3.4), dplyr
        (>= 1.0.2), pillar (>= 1.4.2), Rcpp (>= 1.0.1), tibble (>=
        2.1.3), vctrs (>= 0.3.0)
Suggests: ape (>= 5.3), bioseq (>= 0.1.2), Biostrings (>= 2.52.0),
        covr, knitr, lifecycle, purrr, seqinr (>= 3.4-5), spelling,
        rmarkdown, testthat (>= 3.0.0), withr (>= 2.2.0), rlang, mockr
License: GPL (>= 2)
URL: https://github.com/BioGenies/tidysq
BugReports: https://github.com/BioGenies/tidysq/issues
SystemRequirements: GNU make, C++17
NeedsCompilation: yes
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.2
LinkingTo: Rcpp, testthat
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://biogenies.r-universe.dev
Date/Publication: 2025-01-01 13:47:00 UTC
RemoteUrl: https://github.com/biogenies/tidysq
RemoteRef: HEAD
RemoteSha: 43540b1bc352ea9fd332c1b9ccad9633a36761fc
Packaged: 2026-06-07 07:02:00 UTC; root
Author: Dominik Rafacz [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-0925-1909>),
  Michal Burdukiewicz [aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Laura Bakala [aut],
  Leon Eyrich Jessen [ctb] (ORCID:
    <https://orcid.org/0000-0003-2879-2559>),
  Stefan Roediger [ctb] (ORCID: <https://orcid.org/0000-0002-1441-6512>),
  Jadwiga Slowik [ctb] (ORCID: <https://orcid.org/0000-0003-3466-8933>),
  Weronika Puchala [ctb] (ORCID: <https://orcid.org/0000-0003-2163-1429>),
  Katarzyna Sidorczuk [ctb],
  Filip Pietluch [ctb],
  Jaroslaw Chilimoniuk [ctb] (ORCID:
    <https://orcid.org/0000-0001-5467-018X>)
Maintainer: Dominik Rafacz <dominikrafacz@gmail.com>