{
  "_id": "6a169a73acfb0bcc41d7ddef",
  "Package": "countfitteR",
  "Type": "Package",
  "Title": "Comprehensive Automatized Evaluation of Distribution Models for\nCount Data",
  "Version": "1.5",
  "Authors@R": "c(person(\"Jaroslaw\", \"Chilimoniuk\", \nemail = \"jaroslaw.chilimoniuk@gmail.com\",\ncomment = c(ORCID = \"0000-0001-5467-018X\"),\nrole = c(\"cre\", \"ctb\")),\nperson(\"Alicja\", \"Gosiewska\",\nemail = \"alicjagosiewska@gmail.com\",\ncomment = c(ORCID = \"0000-0001-6563-5742\"),\nrole = c(\"ctb\")),\nperson(\"Jadwiga\", \"Słowik\",\nemail = \"slowikj@student.mini.pw.edu.pl\",\ncomment = c(ORCID = \"0000-0003-3466-8933\"),\nrole = c(\"ctb\")),\nperson(\"Michal\", \"Burdukiewicz\",\nemail = \"michalburdukiewicz@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8926-582X\"),\nrole = c(\"aut\")),\nperson(\"Stefan\", \"Roediger\",\nemail = \"stefan.roedigier@b-tu.de\",\ncomment = c(ORCID = \"0000-0002-1441-6512\"),\nrole = (\"ctb\"))\n)",
  "Maintainer": "Jaroslaw Chilimoniuk <jaroslaw.chilimoniuk@gmail.com>",
  "Description": "A large number of measurements generate count data. This\nis a statistical data type that only assumes non-negative\ninteger values and is generated by counting. Typically,\ncounting data can be found in biomedical applications, such as\nthe analysis of DNA double-strand breaks. The number of DNA\ndouble-strand breaks can be counted in individual cells using\nvarious bioanalytical methods. For diagnostic applications, it\nis relevant to record the distribution of the number data in\norder to determine their biomedical significance (Roediger, S.\net al., 2018. Journal of Laboratory and Precision Medicine.\n<doi:10.21037/jlpm.2018.04.10>). The software offers functions\nfor a comprehensive automated evaluation of distribution models\nof count data. In addition to programmatic interaction, a\ngraphical user interface (web server) is included, which\nenables fast and interactive data-scientific analyses. The user\nis supported in selecting the most suitable counting\ndistribution for his own data set.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "Date": "2025-07-01",
  "URL": "https://github.com/BioGenies/countfitteR",
  "BugReports": "https://github.com/BioGenies/countfitteR/issues",
  "RoxygenNote": "7.3.2",
  "Language": "en-US",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://biogenies.r-universe.dev",
  "Date/Publication": "2025-07-01 10:10:04 UTC",
  "RemoteUrl": "https://github.com/biogenies/countfitter",
  "RemoteRef": "HEAD",
  "RemoteSha": "e177da1c274db0ec49669f50dee460843c83f712",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-27 07:10:16 UTC",
    "User": "root"
  },
  "Author": "Jaroslaw Chilimoniuk [cre, ctb] (ORCID:\n<https://orcid.org/0000-0001-5467-018X>),\nAlicja Gosiewska [ctb] (ORCID: <https://orcid.org/0000-0001-6563-5742>),\nJadwiga Słowik [ctb] (ORCID: <https://orcid.org/0000-0003-3466-8933>),\nMichal Burdukiewicz [aut] (ORCID:\n<https://orcid.org/0000-0001-8926-582X>),\nStefan Roediger [ctb] (ORCID: <https://orcid.org/0000-0002-1441-6512>)",
  "MD5sum": "ac14693aefaa240207b6a8bcecbed687",
  "_user": "biogenies",
  "_type": "src",
  "_file": "countfitteR_1.5.tar.gz",
  "_fileid": "0db5ee71ca7d72abe05d3159bed31f22499c9789b3255e00810c975343728436",
  "_filesize": 1308555,
  "_sha256": "0db5ee71ca7d72abe05d3159bed31f22499c9789b3255e00810c975343728436",
  "_created": "2026-05-27T07:10:16.000Z",
  "_published": "2026-05-27T07:17:07.888Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78025870560,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7234124010"
    },
    {
      "job": 78025870553,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7234123082"
    },
    {
      "job": 78025870527,
      "time": 166,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7234119440"
    },
    {
      "job": 78025870529,
      "time": 160,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7234176115"
    },
    {
      "job": 78025457306,
      "time": 182,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7234078983"
    },
    {
      "job": 78025870531,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7234110888"
    },
    {
      "job": 78025870591,
      "time": 108,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7234108992"
    },
    {
      "job": 78025870545,
      "time": 97,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7234106181"
    },
    {
      "job": 78025870538,
      "time": 118,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7234111926"
    }
  ],
  "_buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/biogenies/countfitter",
  "_commit": {
    "id": "e177da1c274db0ec49669f50dee460843c83f712",
    "author": "jarochi <jaroslaw.chilimoniuk@gmail.com>",
    "committer": "jarochi <jaroslaw.chilimoniuk@gmail.com>",
    "message": "more fixes\n",
    "time": 1751364604
  },
  "_maintainer": {
    "name": "Jaroslaw Chilimoniuk",
    "email": "jaroslaw.chilimoniuk@gmail.com",
    "login": "jarochi",
    "orcid": "0000-0001-5467-018X",
    "description": "",
    "uuid": 33185176
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "pscl",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pander",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "shinythemes",
      "role": "Suggests"
    },
    {
      "package": "shinycssloaders",
      "role": "Suggests"
    },
    {
      "package": "shinyWidgets",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "biogenies",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-27",
      "n": 3
    }
  ],
  "_tags": [],
  "_topics": [
    "cancer",
    "cancer-imaging-research",
    "count-data",
    "count-distribution",
    "foci"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "jarochi",
      "count": 188,
      "uuid": 33185176
    },
    {
      "user": "michbur",
      "count": 81,
      "uuid": 5267317
    },
    {
      "user": "devsjr",
      "count": 32,
      "uuid": 5408324
    },
    {
      "user": "slowikj",
      "count": 8,
      "uuid": 22006724
    },
    {
      "user": "agosiewska",
      "count": 5,
      "uuid": 18423383
    },
    {
      "user": "teunbrand",
      "count": 2,
      "uuid": 49372158
    }
  ],
  "_userbio": {
    "uuid": 70942725,
    "type": "organization",
    "name": "BioGenies"
  },
  "_downloads": {
    "count": 193,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/countfitteR"
  },
  "_devurl": "https://github.com/biogenies/countfitter",
  "_searchresults": 37,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/countfitteR.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/biogenies/countfitter",
  "_realowner": "biogenies",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2019-02-03"
    },
    {
      "version": "1.2",
      "date": "2020-08-10"
    },
    {
      "version": "1.3",
      "date": "2020-09-02"
    },
    {
      "version": "1.4",
      "date": "2020-09-30"
    },
    {
      "version": "1.5",
      "date": "2025-07-01"
    }
  ],
  "_exports": [
    "compare_fit",
    "countfitteR_gui",
    "decide",
    "dZINB",
    "dZIP",
    "fit_counts",
    "plot_fitcmp",
    "process_counts",
    "rZINB",
    "rZIP",
    "select_model",
    "summary_fitlist",
    "validate_counts"
  ],
  "_datasets": [
    {
      "name": "case_study",
      "title": "Short version of the 'case_study_FITC'",
      "object": "case_study",
      "class": [
        "data.frame"
      ],
      "fields": [
        "L3_AF_DMSO_B_10_FITC",
        "L3_AF_100_ETP_11_FITC",
        "L3_AF_100_ETP_12_FITC",
        "L3_AF_Med_C_13_FITC",
        "L3_AF_Med_C_14_FITC",
        "L3_AF_DMSo_C_15_FITC",
        "L3_AF_DMSO_C_16_FITC",
        "L3_AF_100_ETP_17_FITC",
        "L3_AF_100_ETP_18_FITC",
        "L3_AF_Med_D_19_FITC",
        "L3_AF_Med_A_1_FITC",
        "L3_AF_Med_D_20_FITC",
        "L3_AF_DMSo_D_21_FITC",
        "L3_AF_DMSO_D_22_FITC",
        "L3_AF_100_ETP_23_FITC",
        "L3_AF_100_ETP_24_FITC"
      ],
      "rows": 117,
      "table": true,
      "tojson": true
    },
    {
      "name": "case_study_all",
      "title": "Case study with two fluorescent dyes",
      "object": "case_study_all",
      "class": [
        "data.frame"
      ],
      "fields": [
        "L3_AF_DMSO_B_10_FITC",
        "L3_AF_DMSO_B_10_APC",
        "L3_AF_100_ETP_11_FITC",
        "L3_AF_100_ETP_11_APC",
        "L3_AF_100_ETP_12_FITC",
        "L3_AF_100_ETP_12_APC",
        "L3_AF_Med_C_13_FITC",
        "L3_AF_Med_C_13_APC",
        "L3_AF_Med_C_14_FITC",
        "L3_AF_Med_C_14_APC",
        "L3_AF_DMSo_C_15_FITC",
        "L3_AF_DMSo_C_15_APC",
        "L3_AF_DMSO_C_16_FITC",
        "L3_AF_DMSO_C_16_APC",
        "L3_AF_100_ETP_17_FITC",
        "L3_AF_100_ETP_17_APC",
        "L3_AF_100_ETP_18_FITC",
        "L3_AF_100_ETP_18_APC",
        "L3_AF_Med_D_19_FITC",
        "L3_AF_Med_D_19_APC",
        "L3_AF_Med_A_1_FITC",
        "L3_AF_Med_A_1_APC",
        "L3_AF_Med_D_20_FITC",
        "L3_AF_Med_D_20_APC",
        "L3_AF_DMSo_D_21_FITC",
        "L3_AF_DMSo_D_21_APC",
        "L3_AF_DMSO_D_22_FITC",
        "L3_AF_DMSO_D_22_APC",
        "L3_AF_100_ETP_23_FITC",
        "L3_AF_100_ETP_23_APC",
        "L3_AF_100_ETP_24_FITC",
        "L3_AF_100_ETP_24_APC",
        "L3_AF_MedA_2_FITC",
        "L3_AF_MedA_2_APC",
        "L3_AF_DMSO_A_3_FITC",
        "L3_AF_DMSO_A_3_APC",
        "L3_AF_DMSO_A_4_FITC",
        "L3_AF_DMSO_A_4_APC",
        "L3_AF_100_ETP_5_FITC",
        "L3_AF_100_ETP_5_APC",
        "L3_AF_100_ETP_6_FITC",
        "L3_AF_100_ETP_6_APC",
        "L3_AF_Med_B_7_FITC",
        "L3_AF_Med_B_7_APC",
        "L3_AF_Med_B_8_FITC",
        "L3_AF_Med_B_8_APC",
        "L3_AF_DMSO_B_9_FITC",
        "L3_AF_DMSO_B_9_APC",
        "L3_BF_Med_1_FITC",
        "L3_BF_Med_1_APC",
        "L3_BF_Med_2_FITC",
        "L3_BF_Med_2_APC",
        "L3_BF_DMSO_3_FITC",
        "L3_BF_DMSO_3_APC",
        "L3_BF_DMSO_4_FITC",
        "L3_BF_DMSO_4_APC",
        "L3_BF_100uM_ETP_5_FITC",
        "L3_BF_100uM_ETP_5_APC",
        "L3_BF_100uM_ETP_6_FITC",
        "L3_BF_100uM_ETP_6_APC",
        "L5_AF_DMSO_B_10_FITC",
        "L5_AF_DMSO_B_10_APC",
        "L5_AF_100_ETp_11_FITC",
        "L5_AF_100_ETp_11_APC",
        "L5_AF_100_ETP_12_FITC",
        "L5_AF_100_ETP_12_APC",
        "L5_AF_MEd_C_13_FITC",
        "L5_AF_MEd_C_13_APC",
        "L5_AF_Med_C_14_FITC",
        "L5_AF_Med_C_14_APC",
        "L5_AF_DMSO_C_15_FITC",
        "L5_AF_DMSO_C_15_APC",
        "L5_AF_DMSO_C_16_FITC",
        "L5_AF_DMSO_C_16_APC",
        "L5_AF_100_ETP_17_FITC",
        "L5_AF_100_ETP_17_APC",
        "L5_AF_100_ETP_18_FITC",
        "L5_AF_100_ETP_18_APC",
        "L5_AF_Med_D_19_FITC",
        "L5_AF_Med_D_19_APC",
        "L5_AF_Med_A_1_FITC",
        "L5_AF_Med_A_1_APC",
        "L5_AF_Med_D_20_FITC",
        "L5_AF_Med_D_20_APC",
        "L5_AF_DMSO_D_21_FITC",
        "L5_AF_DMSO_D_21_APC",
        "L5_AF_DMSO_D_22_FITC",
        "L5_AF_DMSO_D_22_APC",
        "L5_AF_100_ETP_23_FITC",
        "L5_AF_100_ETP_23_APC",
        "L5_AF_100_ETP_24_FITC",
        "L5_AF_100_ETP_24_APC",
        "L5_AF_Med_A_2_FITC",
        "L5_AF_Med_A_2_APC",
        "L5_AF_DMSO_A_3_FITC",
        "L5_AF_DMSO_A_3_APC",
        "L5_AF_DMSO_A_4_FITC",
        "L5_AF_DMSO_A_4_APC",
        "L5_AF_100_ETP_5_FITC",
        "L5_AF_100_ETP_5_APC",
        "L5_AF_100_ETP_6_FITC",
        "L5_AF_100_ETP_6_APC",
        "L5_AF_Med_B_7_FITC",
        "L5_AF_Med_B_7_APC",
        "L5_AF_Med_B_8_FITC",
        "L5_AF_Med_B_8_APC",
        "L5_AF_DMSO_B_9_FITC",
        "L5_AF_DMSO_B_9_APC",
        "L5_BF_Med_1_FITC",
        "L5_BF_Med_1_APC",
        "L5_BF_Med_2_FITC",
        "L5_BF_Med_2_APC",
        "L5_BF_DMSO_3_FITC",
        "L5_BF_DMSO_3_APC",
        "L5_BF_DMSO_4_FITC",
        "L5_BF_DMSO_4_APC",
        "L5_BF_100_ETP_5_FITC",
        "L5_BF_100_ETP_5_APC",
        "L5_BF_100_ETP_6_FITC",
        "L5_BF_100_ETP_6_APC",
        "L6_AF_DMSO_B_10_FITC",
        "L6_AF_DMSO_B_10_APC",
        "L6_AF_100_ETP_11_FITC",
        "L6_AF_100_ETP_11_APC",
        "L6_AF_100_ETP_12_FITC",
        "L6_AF_100_ETP_12_APC",
        "L6_AF_Med_C_13_FITC",
        "L6_AF_Med_C_13_APC",
        "L6_AF_Med_C_14_FITC",
        "L6_AF_Med_C_14_APC",
        "L6_AF_DMSO_C_15_FITC",
        "L6_AF_DMSO_C_15_APC",
        "L6_AF_DMSO_C_16_FITC",
        "L6_AF_DMSO_C_16_APC",
        "L6_AF_100_ETP_17_FITC",
        "L6_AF_100_ETP_17_APC",
        "L6_AF_100_ETP_18_FITC",
        "L6_AF_100_ETP_18_APC",
        "L6_AF_Med_D_19_FITC",
        "L6_AF_Med_D_19_APC",
        "L6_AF_MEd_A_1_FITC",
        "L6_AF_MEd_A_1_APC",
        "L6_AF_Med_D_20_FITC",
        "L6_AF_Med_D_20_APC",
        "L6_AF_DMSO_D_21_FITC",
        "L6_AF_DMSO_D_21_APC",
        "L6_AF_DMSO_D_22_FITC",
        "L6_AF_DMSO_D_22_APC",
        "L6_AF_100_ETP_23_FITC",
        "L6_AF_100_ETP_23_APC",
        "L6_AF_100_ETP_24_FITC",
        "L6_AF_100_ETP_24_APC",
        "L6_AF_Med_A_2_FITC",
        "L6_AF_Med_A_2_APC",
        "L6_AF_DMSO_A_3_FITC",
        "L6_AF_DMSO_A_3_APC",
        "L6_AF_DMSO_A_4_FITC",
        "L6_AF_DMSO_A_4_APC",
        "L6_AF_100_ETP_5_FITC",
        "L6_AF_100_ETP_5_APC",
        "L6_AF_100_ETP_6_FITC",
        "L6_AF_100_ETP_6_APC",
        "L6_AF_MEd_B_7_FITC",
        "L6_AF_MEd_B_7_APC",
        "L6_AF_Med_B_8_FITC",
        "L6_AF_Med_B_8_APC",
        "L6_AF_DMSO_B_9_FITC",
        "L6_AF_DMSO_B_9_APC",
        "L6_BF_Med_1_FITC",
        "L6_BF_Med_1_APC",
        "L6_BF_Med_2_FITC",
        "L6_BF_Med_2_APC",
        "L6_BF_DMSO_3_FITC",
        "L6_BF_DMSO_3_APC",
        "L6_BF_DMSO_4_FITC",
        "L6_BF_DMSO_4_APC",
        "L6_BF_100_ETP_5_FITC",
        "L6_BF_100_ETP_5_APC",
        "L6_BF_100_ETP_6_FITC",
        "L6_BF_100_ETP_6_APC",
        "L7_AF_DMSO_B_10_FITC",
        "L7_AF_DMSO_B_10_APC",
        "L7_AF_100_ETP_11_FITC",
        "L7_AF_100_ETP_11_APC",
        "L7_AF_100_ETP_12_FITC",
        "L7_AF_100_ETP_12_APC",
        "L7_AF_Med_C_13_FITC",
        "L7_AF_Med_C_13_APC",
        "L7_AF_Med_C_14_FITC",
        "L7_AF_Med_C_14_APC",
        "L7_AF_DMSo_C_15_FITC",
        "L7_AF_DMSo_C_15_APC",
        "L7_AF_DMSO_C_16_FITC",
        "L7_AF_DMSO_C_16_APC",
        "L7_AF_100_ETP_17_FITC",
        "L7_AF_100_ETP_17_APC",
        "L7_AF_100_ETP_18_FITC",
        "L7_AF_100_ETP_18_APC",
        "L7_AF_Med_D_19_FITC",
        "L7_AF_Med_D_19_APC",
        "L7_AF_Med_A_1_FITC",
        "L7_AF_Med_A_1_APC",
        "L7_AF_Med_D_20_FITC",
        "L7_AF_Med_D_20_APC",
        "L7_AF_DMSO_D_21_FITC",
        "L7_AF_DMSO_D_21_APC",
        "L7_AF_DMSO_D_22_FITC",
        "L7_AF_DMSO_D_22_APC",
        "L7_AF_100_ETp_23_FITC",
        "L7_AF_100_ETp_23_APC",
        "L7_AF_100_ETP_24_FITC",
        "L7_AF_100_ETP_24_APC",
        "L7_AF_Med_A_2_FITC",
        "L7_AF_Med_A_2_APC",
        "L7_AF_DMSO_A_3_FITC",
        "L7_AF_DMSO_A_3_APC",
        "L7_AF_DMSO_A_4_FITC",
        "L7_AF_DMSO_A_4_APC",
        "L7_AF_100_ETP_5_FITC",
        "L7_AF_100_ETP_5_APC",
        "L7_AF_100_ETP_6_FITC",
        "L7_AF_100_ETP_6_APC",
        "L7_AF_MEd_B_7_FITC",
        "L7_AF_MEd_B_7_APC",
        "L7_AF_MEd_B_8_FITC",
        "L7_AF_MEd_B_8_APC",
        "L7_AF_DMSO_B_9_FITC",
        "L7_AF_DMSO_B_9_APC",
        "L7_BF_MEd_1_FITC",
        "L7_BF_MEd_1_APC",
        "L7_BF_Med_2_FITC",
        "L7_BF_Med_2_APC",
        "L7_BF_DMSO_3_FITC",
        "L7_BF_DMSO_3_APC",
        "L7_BF_DMSO_4_FITC",
        "L7_BF_DMSO_4_APC",
        "L7_BF_100_ETP_5_FITC",
        "L7_BF_100_ETP_5_APC",
        "L7_BF_100_ETP_6_FITC",
        "L7_BF_100_ETP_6_APC"
      ],
      "rows": 117,
      "table": true,
      "tojson": true
    },
    {
      "name": "case_study_APC",
      "title": "Case study for APC dye",
      "object": "case_study_APC",
      "class": [
        "data.frame"
      ],
      "fields": [
        "L3_AF_DMSO_B_10_APC",
        "L3_AF_100_ETP_11_APC",
        "L3_AF_100_ETP_12_APC",
        "L3_AF_Med_C_13_APC",
        "L3_AF_Med_C_14_APC",
        "L3_AF_DMSo_C_15_APC",
        "L3_AF_DMSO_C_16_APC",
        "L3_AF_100_ETP_17_APC",
        "L3_AF_100_ETP_18_APC",
        "L3_AF_Med_D_19_APC",
        "L3_AF_Med_A_1_APC",
        "L3_AF_Med_D_20_APC",
        "L3_AF_DMSo_D_21_APC",
        "L3_AF_DMSO_D_22_APC",
        "L3_AF_100_ETP_23_APC",
        "L3_AF_100_ETP_24_APC",
        "L3_AF_MedA_2_APC",
        "L3_AF_DMSO_A_3_APC",
        "L3_AF_DMSO_A_4_APC",
        "L3_AF_100_ETP_5_APC",
        "L3_AF_100_ETP_6_APC",
        "L3_AF_Med_B_7_APC",
        "L3_AF_Med_B_8_APC",
        "L3_AF_DMSO_B_9_APC",
        "L3_BF_Med_1_APC",
        "L3_BF_Med_2_APC",
        "L3_BF_DMSO_3_APC",
        "L3_BF_DMSO_4_APC",
        "L3_BF_100uM_ETP_5_APC",
        "L3_BF_100uM_ETP_6_APC",
        "L5_AF_DMSO_B_10_APC",
        "L5_AF_100_ETp_11_APC",
        "L5_AF_100_ETP_12_APC",
        "L5_AF_MEd_C_13_APC",
        "L5_AF_Med_C_14_APC",
        "L5_AF_DMSO_C_15_APC",
        "L5_AF_DMSO_C_16_APC",
        "L5_AF_100_ETP_17_APC",
        "L5_AF_100_ETP_18_APC",
        "L5_AF_Med_D_19_APC",
        "L5_AF_Med_A_1_APC",
        "L5_AF_Med_D_20_APC",
        "L5_AF_DMSO_D_21_APC",
        "L5_AF_DMSO_D_22_APC",
        "L5_AF_100_ETP_23_APC",
        "L5_AF_100_ETP_24_APC",
        "L5_AF_Med_A_2_APC",
        "L5_AF_DMSO_A_3_APC",
        "L5_AF_DMSO_A_4_APC",
        "L5_AF_100_ETP_5_APC",
        "L5_AF_100_ETP_6_APC",
        "L5_AF_Med_B_7_APC",
        "L5_AF_Med_B_8_APC",
        "L5_AF_DMSO_B_9_APC",
        "L5_BF_Med_1_APC",
        "L5_BF_Med_2_APC",
        "L5_BF_DMSO_3_APC",
        "L5_BF_DMSO_4_APC",
        "L5_BF_100_ETP_5_APC",
        "L5_BF_100_ETP_6_APC",
        "L6_AF_DMSO_B_10_APC",
        "L6_AF_100_ETP_11_APC",
        "L6_AF_100_ETP_12_APC",
        "L6_AF_Med_C_13_APC",
        "L6_AF_Med_C_14_APC",
        "L6_AF_DMSO_C_15_APC",
        "L6_AF_DMSO_C_16_APC",
        "L6_AF_100_ETP_17_APC",
        "L6_AF_100_ETP_18_APC",
        "L6_AF_Med_D_19_APC",
        "L6_AF_MEd_A_1_APC",
        "L6_AF_Med_D_20_APC",
        "L6_AF_DMSO_D_21_APC",
        "L6_AF_DMSO_D_22_APC",
        "L6_AF_100_ETP_23_APC",
        "L6_AF_100_ETP_24_APC",
        "L6_AF_Med_A_2_APC",
        "L6_AF_DMSO_A_3_APC",
        "L6_AF_DMSO_A_4_APC",
        "L6_AF_100_ETP_5_APC",
        "L6_AF_100_ETP_6_APC",
        "L6_AF_MEd_B_7_APC",
        "L6_AF_Med_B_8_APC",
        "L6_AF_DMSO_B_9_APC",
        "L6_BF_Med_1_APC",
        "L6_BF_Med_2_APC",
        "L6_BF_DMSO_3_APC",
        "L6_BF_DMSO_4_APC",
        "L6_BF_100_ETP_5_APC",
        "L6_BF_100_ETP_6_APC",
        "L7_AF_DMSO_B_10_APC",
        "L7_AF_100_ETP_11_APC",
        "L7_AF_100_ETP_12_APC",
        "L7_AF_Med_C_13_APC",
        "L7_AF_Med_C_14_APC",
        "L7_AF_DMSo_C_15_APC",
        "L7_AF_DMSO_C_16_APC",
        "L7_AF_100_ETP_17_APC",
        "L7_AF_100_ETP_18_APC",
        "L7_AF_Med_D_19_APC",
        "L7_AF_Med_A_1_APC",
        "L7_AF_Med_D_20_APC",
        "L7_AF_DMSO_D_21_APC",
        "L7_AF_DMSO_D_22_APC",
        "L7_AF_100_ETp_23_APC",
        "L7_AF_100_ETP_24_APC",
        "L7_AF_Med_A_2_APC",
        "L7_AF_DMSO_A_3_APC",
        "L7_AF_DMSO_A_4_APC",
        "L7_AF_100_ETP_5_APC",
        "L7_AF_100_ETP_6_APC",
        "L7_AF_MEd_B_7_APC",
        "L7_AF_MEd_B_8_APC",
        "L7_AF_DMSO_B_9_APC",
        "L7_BF_MEd_1_APC",
        "L7_BF_Med_2_APC",
        "L7_BF_DMSO_3_APC",
        "L7_BF_DMSO_4_APC",
        "L7_BF_100_ETP_5_APC",
        "L7_BF_100_ETP_6_APC"
      ],
      "rows": 117,
      "table": true,
      "tojson": true
    },
    {
      "name": "case_study_FITC",
      "title": "Case study for FITC dye",
      "object": "case_study_FITC",
      "class": [
        "data.frame"
      ],
      "fields": [
        "L3_AF_DMSO_B_10_FITC",
        "L3_AF_100_ETP_11_FITC",
        "L3_AF_100_ETP_12_FITC",
        "L3_AF_Med_C_13_FITC",
        "L3_AF_Med_C_14_FITC",
        "L3_AF_DMSo_C_15_FITC",
        "L3_AF_DMSO_C_16_FITC",
        "L3_AF_100_ETP_17_FITC",
        "L3_AF_100_ETP_18_FITC",
        "L3_AF_Med_D_19_FITC",
        "L3_AF_Med_A_1_FITC",
        "L3_AF_Med_D_20_FITC",
        "L3_AF_DMSo_D_21_FITC",
        "L3_AF_DMSO_D_22_FITC",
        "L3_AF_100_ETP_23_FITC",
        "L3_AF_100_ETP_24_FITC",
        "L3_AF_MedA_2_FITC",
        "L3_AF_DMSO_A_3_FITC",
        "L3_AF_DMSO_A_4_FITC",
        "L3_AF_100_ETP_5_FITC",
        "L3_AF_100_ETP_6_FITC",
        "L3_AF_Med_B_7_FITC",
        "L3_AF_Med_B_8_FITC",
        "L3_AF_DMSO_B_9_FITC",
        "L3_BF_Med_1_FITC",
        "L3_BF_Med_2_FITC",
        "L3_BF_DMSO_3_FITC",
        "L3_BF_DMSO_4_FITC",
        "L3_BF_100uM_ETP_5_FITC",
        "L3_BF_100uM_ETP_6_FITC",
        "L5_AF_DMSO_B_10_FITC",
        "L5_AF_100_ETp_11_FITC",
        "L5_AF_100_ETP_12_FITC",
        "L5_AF_MEd_C_13_FITC",
        "L5_AF_Med_C_14_FITC",
        "L5_AF_DMSO_C_15_FITC",
        "L5_AF_DMSO_C_16_FITC",
        "L5_AF_100_ETP_17_FITC",
        "L5_AF_100_ETP_18_FITC",
        "L5_AF_Med_D_19_FITC",
        "L5_AF_Med_A_1_FITC",
        "L5_AF_Med_D_20_FITC",
        "L5_AF_DMSO_D_21_FITC",
        "L5_AF_DMSO_D_22_FITC",
        "L5_AF_100_ETP_23_FITC",
        "L5_AF_100_ETP_24_FITC",
        "L5_AF_Med_A_2_FITC",
        "L5_AF_DMSO_A_3_FITC",
        "L5_AF_DMSO_A_4_FITC",
        "L5_AF_100_ETP_5_FITC",
        "L5_AF_100_ETP_6_FITC",
        "L5_AF_Med_B_7_FITC",
        "L5_AF_Med_B_8_FITC",
        "L5_AF_DMSO_B_9_FITC",
        "L5_BF_Med_1_FITC",
        "L5_BF_Med_2_FITC",
        "L5_BF_DMSO_3_FITC",
        "L5_BF_DMSO_4_FITC",
        "L5_BF_100_ETP_5_FITC",
        "L5_BF_100_ETP_6_FITC",
        "L6_AF_DMSO_B_10_FITC",
        "L6_AF_100_ETP_11_FITC",
        "L6_AF_100_ETP_12_FITC",
        "L6_AF_Med_C_13_FITC",
        "L6_AF_Med_C_14_FITC",
        "L6_AF_DMSO_C_15_FITC",
        "L6_AF_DMSO_C_16_FITC",
        "L6_AF_100_ETP_17_FITC",
        "L6_AF_100_ETP_18_FITC",
        "L6_AF_Med_D_19_FITC",
        "L6_AF_MEd_A_1_FITC",
        "L6_AF_Med_D_20_FITC",
        "L6_AF_DMSO_D_21_FITC",
        "L6_AF_DMSO_D_22_FITC",
        "L6_AF_100_ETP_23_FITC",
        "L6_AF_100_ETP_24_FITC",
        "L6_AF_Med_A_2_FITC",
        "L6_AF_DMSO_A_3_FITC",
        "L6_AF_DMSO_A_4_FITC",
        "L6_AF_100_ETP_5_FITC",
        "L6_AF_100_ETP_6_FITC",
        "L6_AF_MEd_B_7_FITC",
        "L6_AF_Med_B_8_FITC",
        "L6_AF_DMSO_B_9_FITC",
        "L6_BF_Med_1_FITC",
        "L6_BF_Med_2_FITC",
        "L6_BF_DMSO_3_FITC",
        "L6_BF_DMSO_4_FITC",
        "L6_BF_100_ETP_5_FITC",
        "L6_BF_100_ETP_6_FITC",
        "L7_AF_DMSO_B_10_FITC",
        "L7_AF_100_ETP_11_FITC",
        "L7_AF_100_ETP_12_FITC",
        "L7_AF_Med_C_13_FITC",
        "L7_AF_Med_C_14_FITC",
        "L7_AF_DMSo_C_15_FITC",
        "L7_AF_DMSO_C_16_FITC",
        "L7_AF_100_ETP_17_FITC",
        "L7_AF_100_ETP_18_FITC",
        "L7_AF_Med_D_19_FITC",
        "L7_AF_Med_A_1_FITC",
        "L7_AF_Med_D_20_FITC",
        "L7_AF_DMSO_D_21_FITC",
        "L7_AF_DMSO_D_22_FITC",
        "L7_AF_100_ETp_23_FITC",
        "L7_AF_100_ETP_24_FITC",
        "L7_AF_Med_A_2_FITC",
        "L7_AF_DMSO_A_3_FITC",
        "L7_AF_DMSO_A_4_FITC",
        "L7_AF_100_ETP_5_FITC",
        "L7_AF_100_ETP_6_FITC",
        "L7_AF_MEd_B_7_FITC",
        "L7_AF_MEd_B_8_FITC",
        "L7_AF_DMSO_B_9_FITC",
        "L7_BF_MEd_1_FITC",
        "L7_BF_Med_2_FITC",
        "L7_BF_DMSO_3_FITC",
        "L7_BF_DMSO_4_FITC",
        "L7_BF_100_ETP_5_FITC",
        "L7_BF_100_ETP_6_FITC"
      ],
      "rows": 117,
      "table": true,
      "tojson": true
    },
    {
      "name": "sim_dat",
      "title": "Data created from simulation of NB Poiss",
      "object": "sim_dat",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "model",
        "prop",
        "replicate",
        "lambda",
        "theta"
      ],
      "rows": 24000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "countfitteR-package",
      "title": "countfitteR - a framework for fitting count distributions in R",
      "topics": [
        "countfitteR-package",
        "countfitteR"
      ]
    },
    {
      "page": "case_study",
      "title": "Short version of the 'case_study_FITC'",
      "topics": [
        "case_study"
      ]
    },
    {
      "page": "case_study_all",
      "title": "Case study with two fluorescent dyes",
      "topics": [
        "case_study_all"
      ]
    },
    {
      "page": "case_study_APC",
      "title": "Case study for APC dye",
      "topics": [
        "case_study_APC"
      ]
    },
    {
      "page": "case_study_FITC",
      "title": "Case study for FITC dye",
      "topics": [
        "case_study_FITC"
      ]
    },
    {
      "page": "compare_fit",
      "title": "Compare fits",
      "topics": [
        "compare_fit"
      ]
    },
    {
      "page": "countfitteR_gui",
      "title": "countfitteR Graphical User Interface",
      "topics": [
        "countfitteR_gui"
      ]
    },
    {
      "page": "decide",
      "title": "Make a decision based on the BIC value",
      "topics": [
        "decide"
      ]
    },
    {
      "page": "fit_counts",
      "title": "Fit counts to distributions",
      "topics": [
        "fit_counts"
      ]
    },
    {
      "page": "plot_fitcmp",
      "title": "plot_fitcmp",
      "topics": [
        "plot_fitcmp"
      ]
    },
    {
      "page": "process_counts",
      "title": "Process counts",
      "topics": [
        "process_counts"
      ]
    },
    {
      "page": "select_model",
      "title": "Select the most appropriate model",
      "topics": [
        "select_model"
      ]
    },
    {
      "page": "sim_dat",
      "title": "Data created from simulation of NB Poiss",
      "topics": [
        "sim_dat"
      ]
    },
    {
      "page": "summary_fitlist",
      "title": "Summary of estimates",
      "topics": [
        "summary_fitlist"
      ]
    },
    {
      "page": "validate_counts",
      "title": "Validate data",
      "topics": [
        "validate_counts"
      ]
    },
    {
      "page": "zinb",
      "title": "Zero-inflated negative binomial distrbution",
      "topics": [
        "dZINB",
        "rZINB",
        "ZINB",
        "zinb"
      ]
    },
    {
      "page": "zip",
      "title": "Zero-inflated Poisson distrbution",
      "topics": [
        "dZIP",
        "rZIP",
        "ZIP",
        "zip"
      ]
    }
  ],
  "_readme": "https://github.com/biogenies/countfitter/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "digest",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "ggplot2",
    "glue",
    "gtable",
    "htmltools",
    "httpuv",
    "isoband",
    "jquerylib",
    "jsonlite",
    "labeling",
    "later",
    "lifecycle",
    "magrittr",
    "MASS",
    "memoise",
    "mime",
    "otel",
    "promises",
    "pscl",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "sass",
    "scales",
    "shiny",
    "sourcetools",
    "vctrs",
    "viridisLite",
    "withr",
    "xtable"
  ],
  "_vignettes": [
    {
      "source": "countfitteR.Rmd",
      "filename": "countfitteR.html",
      "title": "countfitteR package - an overview",
      "author": "Jarosław Chilimoniuk, Alicja Gosiewska, Jadwiga Słowik, Stefan Rödiger, Michał Burdukiewicz",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Data sets",
        "References"
      ],
      "created": "2018-07-10 20:20:43",
      "modified": "2020-08-11 06:36:51",
      "commits": 13
    }
  ],
  "_score": 5.568201724066995,
  "_indexed": true,
  "_nocasepkg": "countfitter",
  "_universes": [
    "biogenies",
    "jarochi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5",
      "date": "2026-05-27T07:12:36.000Z",
      "distro": "noble",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "c1d326ce7f071e76a25b0d34979f6a8b5957c1d95e61ace0259361f663e78f94",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.5",
      "date": "2026-05-27T07:12:35.000Z",
      "distro": "noble",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "1250d302b00f853d87f128231c363fbf071c45899faf1a150566d03a93c8cf2d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.5",
      "date": "2026-05-27T07:12:32.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "70a28c84bccfa2cd8da35e88296c6d9961d978659e380b6033bde6e94f518241",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.5",
      "date": "2026-05-27T07:15:57.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "e1f8b8f4a0f487d9da51d982744a4cb46f2b3dec486f455f001b5a25cfaf83b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.5",
      "date": "2026-05-27T07:12:27.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "6bb9d089f6ed63e2cfc215e635bc62b9f1cb4adda2cdf1d9b9327e9de194c102",
      "status": "success",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-27T07:11:38.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "634e9bcc14147d3d2d0f6f0ecf74cab47f4f0cff239d80f0f1f20eb30dbf18c4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-27T07:11:32.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "73b4dbb06ed79b6e66657cd544617da802c587d0bc0d11a658d5215f5c1ee7a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-27T07:11:45.000Z",
      "commit": "e177da1c274db0ec49669f50dee460843c83f712",
      "fileid": "f67093df84ccc4a3e2a924a4626a231c2dd5a644dc0d78e437862f1d061cf521",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biogenies/actions/runs/26496353289"
    }
  ]
}